CressInt

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Analysis mode

Intersect: Intersect input coordinates with selected datasets.
Find TF/SNPs: Identify SNPs within input coordinates, and the transcription factors whose binding they might affect.
Phenotypes to TF/SNPs: Identify SNPs associated with phenotypes of interest, and the transcription factors whose binding they might affect.

Intersect Find TF/SNPs Phenotypes to TF/SNPs

Input values

Input type:

Genomic coordinates Gene names FASTA sequence(s)

Enter list of genomic coordinates:
(TAIR build 10)
3, 4, 5, or 6-column
BED format

Our apologies: file uploads are (temporarily) disabled.

Choose phenotype(s):

Choose phenotypes to identify associated SNPs, and the transcription factors whose binding they might affect.

Selecting a phenotype from the list at the left will show an extended description here.

Parameters

Coordinates relative to TSS?:

Add upstream/downstream:

/ (default: -1000 / +0 relative to gene body)

Available Lines		Selected Lines

Select all, none		Select all, none

Available Tracks		Selected Tracks

Select all, none		Select all, none

Job details

Job name (optional)

alphanumerics and _.+-@:?!() are allowed

Submitting job to cluster...